Materialize a conventional aligned FASTA from an immutable MSA placement

cURL

curl --request POST \
  --url "https://api.rafflesia.ai/v1/sequences/msa/materialize" \
  --header "Authorization: Bearer $RAFFLESIA_API_KEY" \
  --header "Content-Type: application/json" \
  --data '{
    "placement_object_id": "<placement_object_id>"
  }'

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      "bucket": "<string>",
      "content_type": "<string>",
      "object_key": "<string>",
      "path": "<string>",
      "storage_backend": "<string>",
      "uri": "<string>"
    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
        "directory_page_reads": 123,
        "object_bytes": 123,
        "object_reads": 123,
        "peak_resident_directory_pages": 123,
        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
      "backbone_stream_bytes": 123,
      "backbone_stream_chunks": 123,
      "elapsed_ms": 123,
      "is_backbone_invariant": true,
      "is_backbone_sha256_valid": true,
      "is_cache_hit": true,
      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
  "ok": true,
  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
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        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
  "data": {
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    "alignment_object": {
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      "object_id": "<string>",
      "sha256": "<string>",
      "size_bytes": 123,
      "bucket": "<string>",
      "content_type": "<string>",
      "object_key": "<string>",
      "path": "<string>",
      "storage_backend": "<string>",
      "uri": "<string>"
    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
        "directory_page_reads": 123,
        "object_bytes": 123,
        "object_reads": 123,
        "peak_resident_directory_pages": 123,
        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
      "backbone_stream_bytes": 123,
      "backbone_stream_chunks": 123,
      "elapsed_ms": 123,
      "is_backbone_invariant": true,
      "is_backbone_sha256_valid": true,
      "is_cache_hit": true,
      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
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    "duration_ms": 123,
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      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
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  }
}

POST

sequences

msa

materialize

cURL

curl --request POST \
  --url "https://api.rafflesia.ai/v1/sequences/msa/materialize" \
  --header "Authorization: Bearer $RAFFLESIA_API_KEY" \
  --header "Content-Type: application/json" \
  --data '{
    "placement_object_id": "<placement_object_id>"
  }'

{
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  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
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      "details": {}
    }
  ],
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    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
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        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
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      "elapsed_ms": 123,
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      "is_backbone_sha256_valid": true,
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      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
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      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
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    "created_at": "<string>",
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    "request_id": "<string>",
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    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
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      "bucket": "<string>",
      "content_type": "<string>",
      "object_key": "<string>",
      "path": "<string>",
      "storage_backend": "<string>",
      "uri": "<string>"
    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
        "directory_page_reads": 123,
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        "object_reads": 123,
        "peak_resident_directory_pages": 123,
        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
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      "elapsed_ms": 123,
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      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
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    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
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    ],
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      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

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      {
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        "kind": "<string>"
      }
    ],
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    },
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      },
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      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
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    "code": "<string>",
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    "param": "<string>"
  },
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    ],
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      "<string>"
    ],
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      "<string>"
    ],
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  }
}

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    "created_at": "<string>",
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    "request_id": "<string>",
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    "cache_hit": true,
    "database_snapshots": [
      {
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        "kind": "<string>"
      }
    ],
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      },
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      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
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        "message": "<string>",
        "details": {}
      }
    ]
  },
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  },
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    ],
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    ],
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  }
}

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      }
    ],
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      },
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    },
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  },
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}

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      "is_cache_hit": true,
      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
  "ok": true,
  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
  "data": {
    "alignment_length": 2,
    "alignment_object": {
      "kind": "<string>",
      "object_id": "<string>",
      "sha256": "<string>",
      "size_bytes": 123,
      "bucket": "<string>",
      "content_type": "<string>",
      "object_key": "<string>",
      "path": "<string>",
      "storage_backend": "<string>",
      "uri": "<string>"
    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
        "directory_page_reads": 123,
        "object_bytes": 123,
        "object_reads": 123,
        "peak_resident_directory_pages": 123,
        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
      "backbone_stream_bytes": 123,
      "backbone_stream_chunks": 123,
      "elapsed_ms": 123,
      "is_backbone_invariant": true,
      "is_backbone_sha256_valid": true,
      "is_cache_hit": true,
      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
  "ok": true,
  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
  "data": {
    "alignment_length": 2,
    "alignment_object": {
      "kind": "<string>",
      "object_id": "<string>",
      "sha256": "<string>",
      "size_bytes": 123,
      "bucket": "<string>",
      "content_type": "<string>",
      "object_key": "<string>",
      "path": "<string>",
      "storage_backend": "<string>",
      "uri": "<string>"
    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
        "directory_page_reads": 123,
        "object_bytes": 123,
        "object_reads": 123,
        "peak_resident_directory_pages": 123,
        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
      "backbone_stream_bytes": 123,
      "backbone_stream_chunks": 123,
      "elapsed_ms": 123,
      "is_backbone_invariant": true,
      "is_backbone_sha256_valid": true,
      "is_cache_hit": true,
      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
  "ok": true,
  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
  "data": {
    "alignment_length": 2,
    "alignment_object": {
      "kind": "<string>",
      "object_id": "<string>",
      "sha256": "<string>",
      "size_bytes": 123,
      "bucket": "<string>",
      "content_type": "<string>",
      "object_key": "<string>",
      "path": "<string>",
      "storage_backend": "<string>",
      "uri": "<string>"
    },
    "download_url": "<string>",
    "measurements": {
      "backbone_reads": {
        "directory_page_bytes": 123,
        "directory_page_reads": 123,
        "object_bytes": 123,
        "object_reads": 123,
        "peak_resident_directory_pages": 123,
        "range_bytes": 123,
        "range_reads": 123,
        "record_bytes": 123,
        "record_reads": 123,
        "remote_requests": 123,
        "retry_count": 123
      },
      "backbone_rows_read": 123,
      "backbone_stream_bytes": 123,
      "backbone_stream_chunks": 123,
      "elapsed_ms": 123,
      "is_backbone_invariant": true,
      "is_backbone_sha256_valid": true,
      "is_cache_hit": true,
      "is_query_residue_preserved": true,
      "is_streaming": true,
      "materialized_rows": 123,
      "maximum_input_row_bytes": 123,
      "maximum_output_row_bytes": 123
    },
    "object": "msa_alignment",
    "placement_id": "<string>",
    "sequence_count": 3,
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ]
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

Authorizations

Authorization

string

header

required

A Rafflesia API key, sent as Authorization: Bearer <key>.

Body

application/json

placement_object_id

string

required

Placement manifest object returned by sequences.msa.place.

Pattern: ^sha256:[0-9a-f]{64}$

Response

boolean

required

Whether the operation succeeded.

provenance

object

required

Execution provenance.

Show child attributes

warnings

object[] | null

required

Non-fatal warnings.

Show child attributes

$schema

string<uri>

read-only

A URL to the JSON Schema for this object.

Example:

"https://example.com/schemas/EnvelopeMSAMaterializeData.json"

data

object

Operation result data.

Show child attributes

error

object

Structured error information.

Show child attributes

evidence

object

Mechanical evidence summary for agent inspection and chaining.

Show child attributes

Place one receipt-bound protein sequence into an immutable MSA component

Download immutable materialized aligned FASTA bytes

Reference

Endpoints

Materialize a conventional aligned FASTA from an immutable MSA placement

Authorizations

Body

Response