cURL
curl --request POST \
--url "https://api.rafflesia.ai/v1/sequences/msa/alphafold" \
--header "Authorization: Bearer $RAFFLESIA_API_KEY" \
--header "Content-Type: application/json" \
--data '{
"databases": {
"mgnify": "<mgnify>",
"uniref90": "<uniref90>"
},
"profile": "af2",
"query": {
"id": "<id>",
"kind": "protein_sequence",
"sequence": "<sequence>"
}
}'{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
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},
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},
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"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
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"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
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"path": "<string>",
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},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
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"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
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},
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"sequence_count": 2
},
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"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
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"details": {},
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},
"evidence": {
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],
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"<string>"
],
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],
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}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
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"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
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"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
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"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
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"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
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},
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},
"pairing": {
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"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
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"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
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"duration_ms": 123,
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"<string>"
],
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"<string>"
],
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"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
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"tool_versions": [
{
"name": "<string>",
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}
]
},
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}
],
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"id": "<string>",
"is_upstream_byte_exact": true,
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"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
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"bucket": "<string>",
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},
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},
"pairing": {
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"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
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"<string>"
],
"object_refs": [
"<string>"
],
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"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
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"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
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"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}POST
/
v1
/
sequences
/
msa
/
alphafold
cURL
curl --request POST \
--url "https://api.rafflesia.ai/v1/sequences/msa/alphafold" \
--header "Authorization: Bearer $RAFFLESIA_API_KEY" \
--header "Content-Type: application/json" \
--data '{
"databases": {
"mgnify": "<mgnify>",
"uniref90": "<uniref90>"
},
"profile": "af2",
"query": {
"id": "<id>",
"kind": "protein_sequence",
"sequence": "<sequence>"
}
}'{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
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"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "<string>",
"data": {
"assembly_algorithm": "query_anchored_a3m_v1",
"homology_engine": "tomato",
"id": "<string>",
"is_upstream_byte_exact": true,
"lanes": [
{
"a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"candidate_count": 123,
"database_release_id": "<string>",
"is_upstream_limit_unbounded": true,
"projected_row_count": 123,
"receipt": {
"execution_receipt_id": "<string>",
"execution_receipt_sha256": "<string>",
"outcome_id": "<string>",
"outcome_sha256": "<string>",
"result_sha256": "<string>"
},
"requested_max_results": 123,
"search_id": "<string>",
"search_policy_id": "<string>",
"skipped_alignment_count": 123,
"upstream_max_results": 123
}
],
"manifest_download_url": "<string>",
"manifest_object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"object": "alphafold_msa_build",
"query": {
"id": "<string>",
"kind": "protein_sequence",
"sequence": "<string>"
},
"unpaired_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"paired_source_a3m": {
"download_url": "<string>",
"object": {
"kind": "<string>",
"object_id": "<string>",
"sha256": "<string>",
"size_bytes": 123,
"bucket": "<string>",
"content_type": "<string>",
"object_key": "<string>",
"path": "<string>",
"storage_backend": "<string>",
"uri": "<string>"
},
"query_length": 2,
"sequence_count": 2
},
"pairing": {
"header_auxiliary_taxonomy_count": 123,
"header_species_id_count": 123,
"is_species_pairing_ready": true
}
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}Authorizations
A Rafflesia API key, sent as Authorization: Bearer <key>.
Body
application/json
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AlphaFold assembly policy. af2_multimer adds the UniProt pairing-source MSA used by AlphaFold-Multimer.
Available options:
af2, af2_multimer, af3 One protein chain. AlphaFold's protein data pipeline runs independently per unique chain sequence; complex-wide species pairing happens later.
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Optional per-lane result limits. Omitted values resolve to the profile defaults and are recorded in the manifest.
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Response
OK
Whether the operation succeeded.
Execution provenance.
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Non-fatal warnings.
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A URL to the JSON Schema for this object.
Example:
"https://example.com/schemas/EnvelopeAlphaFoldMSABuildData.json"
Operation result data.
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Structured error information.
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Mechanical evidence summary for agent inspection and chaining.
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Retrieve an immutable reusable homology target space
Download an immutable AlphaFold MSA build manifest
⌘I