cURL
curl --request GET \
--url "https://api.rafflesia.ai/v1/homology/searches/{homology_search_id}/results?limit=100" \
--header "Authorization: Bearer $RAFFLESIA_API_KEY"
{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
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"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}Pages the stable ranked results of a completed homology search. Each result carries typed measurements and provenance. Expired result sets return 410.
GET
/
v1
/
homology
/
searches
/
{homology_search_id}
/
results
cURL
curl --request GET \
--url "https://api.rafflesia.ai/v1/homology/searches/{homology_search_id}/results?limit=100" \
--header "Authorization: Bearer $RAFFLESIA_API_KEY"
{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}{
"ok": true,
"provenance": {
"created_at": "<string>",
"operation": "<string>",
"request_id": "<string>",
"server_version": "<string>",
"cache_hit": true,
"database_snapshots": [
{
"name": "<string>",
"version": "<string>",
"digest": "<string>",
"kind": "<string>"
}
],
"generated_object_ids": [
"<string>"
],
"input_hash": "<string>",
"parameters_hash": "<string>",
"tool_versions": [
{
"name": "<string>",
"version": "<string>",
"path": "<string>"
}
]
},
"warnings": [
{
"code": "<string>",
"message": "<string>",
"details": {}
}
],
"$schema": "https://example.com/schemas/EnvelopeHomologySearchResultList.json",
"data": {
"data": [
{
"measurements": {
"affine": {
"normalized_score": 123,
"raw_score": 123
},
"late_interaction": {
"distance": 123,
"mean_closest_cosine_distance": 123,
"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
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"mean_closest_cosine_similarity": 123,
"query_token_count": 123
},
"maxsim": {
"bidirectional": 123,
"query_to_target": 123,
"target_to_query": 123
}
},
"rank": 2,
"target": {
"id": "<string>",
"sequence": "<string>",
"attributes": {}
},
"alignment": {
"aligned_residue_count": 1,
"cigar": "<string>",
"cigar_dialect": "extended",
"coordinate_system": "zero_based_half_open",
"gap_opening_count": 1,
"gap_residue_count": 1,
"identical_residue_count": 1,
"query_coverage_ratio": 0.5,
"query_end": 1,
"query_length": 2,
"query_start": 1,
"sequence_identity_ratio": 0.5,
"target_coverage_ratio": 0.5,
"target_end": 1,
"target_length": 2,
"target_start": 1
},
"significance": {
"status": "supported_empirical",
"measurements": {
"calibration_id": "<string>",
"calibration_sample_count": 1,
"is_family_wise_lower_bound": true,
"searched_residue_count": 1,
"searched_sequence_count": 1,
"support_status": "supported_empirical",
"bit_score": 123,
"calibration_bin": "<string>",
"e_value_calibration_id": "<string>",
"e_value_conditioning_context_id": "<string>",
"e_value_estimand": "<string>",
"e_value_maximum_log_extrapolation_factor": 1,
"e_value_method": "<string>",
"e_value_null_population_id": "<string>",
"e_value_qualification_id": "<string>",
"e_value_search_policy_id": "<string>",
"e_value_searched_inventory_id": "<string>",
"e_value_supported_log_maximum": 123,
"e_value_supported_log_minimum": 123,
"e_value_tail_coordinate": 123,
"e_value_target_stratum_count": 1,
"expected_false_hits": 1,
"family_wise_exceedance_probability": 0.5,
"is_e_value_upper_bound": true,
"log_expected_false_hits": 123,
"minimum_resolvable_probability": 0.5,
"pair_tail_log_probability": 123,
"pair_tail_probability": 0.5,
"pair_tail_surprisal_bits": 1,
"q_value": 0.5,
"tail_model": {
"fit_exceedance_count": 1,
"holdout_exceedance_count": 1,
"holdout_kolmogorov_smirnov": 0.5,
"holdout_significance_level": 0.5,
"k": 1,
"lambda": 1,
"threshold_score": 123
}
},
"reason": "<string>"
}
}
],
"has_more": true,
"object": "list",
"url": "<string>",
"next_cursor": "<string>"
},
"error": {
"code": "<string>",
"doc_url": "<string>",
"message": "<string>",
"type": "invalid_request_error",
"details": {},
"param": "<string>"
},
"evidence": {
"warnings_count": 123,
"duration_ms": 123,
"input_refs": [
"<string>"
],
"object_refs": [
"<string>"
],
"output_refs": [
"<string>"
],
"row_count": 123
}
}Authorizations
A Rafflesia API key, sent as Authorization: Bearer <key>.
Headers
Optional dated contract pin. Omit to use the current 2026-08-08 homology contract.
Path Parameters
Query Parameters
Required range:
1 <= x <= 100Response
OK
Whether the operation succeeded.
Execution provenance.
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Non-fatal warnings.
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A URL to the JSON Schema for this object.
Example:
"https://example.com/schemas/EnvelopeHomologySearchResultList.json"
Operation result data. Absent when the operation did not succeed.
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Structured error information.
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Mechanical evidence summary for agent inspection and chaining.
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⌘I