Create a retained homology search

curl --request POST \
  --url https://api.rafflesia.ai/v1/homology \
  --header 'Authorization: Bearer <token>' \
  --header 'Content-Type: application/json' \
  --header 'Idempotency-Key: <idempotency-key>' \
  --data '
{
  "query": {
    "kind": "protein_sequence",
    "sequence": "<string>"
  },
  "results": {
    "max_results": 5000,
    "significance_requirement": "not_requested",
    "unit": "target"
  },
  "target": {
    "database_release_id": "<string>",
    "filter": {
      "filters": [
        "<unknown>"
      ],
      "op": "and",
      "field": "<string>",
      "filter": "<unknown>",
      "value": "<string>",
      "values": [
        "<string>"
      ]
    }
  },
  "constraints": {
    "deadline_ms": 2,
    "max_billable_units": 2
  },
  "policy": {
    "id": "<string>"
  }
}
'

import requests

url = "https://api.rafflesia.ai/v1/homology"

payload = {
    "query": {
        "kind": "protein_sequence",
        "sequence": "<string>"
    },
    "results": {
        "max_results": 5000,
        "significance_requirement": "not_requested",
        "unit": "target"
    },
    "target": {
        "database_release_id": "<string>",
        "filter": {
            "filters": ["<unknown>"],
            "op": "and",
            "field": "<string>",
            "filter": "<unknown>",
            "value": "<string>",
            "values": ["<string>"]
        }
    },
    "constraints": {
        "deadline_ms": 2,
        "max_billable_units": 2
    },
    "policy": { "id": "<string>" }
}
headers = {
    "Idempotency-Key": "<idempotency-key>",
    "Authorization": "Bearer <token>",
    "Content-Type": "application/json"
}

response = requests.post(url, json=payload, headers=headers)

print(response.text)

const options = {
  method: 'POST',
  headers: {
    'Idempotency-Key': '<idempotency-key>',
    Authorization: 'Bearer <token>',
    'Content-Type': 'application/json'
  },
  body: JSON.stringify({
    query: {kind: 'protein_sequence', sequence: '<string>'},
    results: {max_results: 5000, significance_requirement: 'not_requested', unit: 'target'},
    target: {
      database_release_id: '<string>',
      filter: {
        filters: ['<unknown>'],
        op: 'and',
        field: '<string>',
        filter: '<unknown>',
        value: '<string>',
        values: ['<string>']
      }
    },
    constraints: {deadline_ms: 2, max_billable_units: 2},
    policy: {id: '<string>'}
  })
};

fetch('https://api.rafflesia.ai/v1/homology', options)
  .then(res => res.json())
  .then(res => console.log(res))
  .catch(err => console.error(err));

<?php

$curl = curl_init();

curl_setopt_array($curl, [
  CURLOPT_URL => "https://api.rafflesia.ai/v1/homology",
  CURLOPT_RETURNTRANSFER => true,
  CURLOPT_ENCODING => "",
  CURLOPT_MAXREDIRS => 10,
  CURLOPT_TIMEOUT => 30,
  CURLOPT_HTTP_VERSION => CURL_HTTP_VERSION_1_1,
  CURLOPT_CUSTOMREQUEST => "POST",
  CURLOPT_POSTFIELDS => json_encode([
    'query' => [
        'kind' => 'protein_sequence',
        'sequence' => '<string>'
    ],
    'results' => [
        'max_results' => 5000,
        'significance_requirement' => 'not_requested',
        'unit' => 'target'
    ],
    'target' => [
        'database_release_id' => '<string>',
        'filter' => [
                'filters' => [
                                '<unknown>'
                ],
                'op' => 'and',
                'field' => '<string>',
                'filter' => '<unknown>',
                'value' => '<string>',
                'values' => [
                                '<string>'
                ]
        ]
    ],
    'constraints' => [
        'deadline_ms' => 2,
        'max_billable_units' => 2
    ],
    'policy' => [
        'id' => '<string>'
    ]
  ]),
  CURLOPT_HTTPHEADER => [
    "Authorization: Bearer <token>",
    "Content-Type: application/json",
    "Idempotency-Key: <idempotency-key>"
  ],
]);

$response = curl_exec($curl);
$err = curl_error($curl);

curl_close($curl);

if ($err) {
  echo "cURL Error #:" . $err;
} else {
  echo $response;
}

package main

import (
	"fmt"
	"strings"
	"net/http"
	"io"
)

func main() {

	url := "https://api.rafflesia.ai/v1/homology"

	payload := strings.NewReader("{\n  \"query\": {\n    \"kind\": \"protein_sequence\",\n    \"sequence\": \"<string>\"\n  },\n  \"results\": {\n    \"max_results\": 5000,\n    \"significance_requirement\": \"not_requested\",\n    \"unit\": \"target\"\n  },\n  \"target\": {\n    \"database_release_id\": \"<string>\",\n    \"filter\": {\n      \"filters\": [\n        \"<unknown>\"\n      ],\n      \"op\": \"and\",\n      \"field\": \"<string>\",\n      \"filter\": \"<unknown>\",\n      \"value\": \"<string>\",\n      \"values\": [\n        \"<string>\"\n      ]\n    }\n  },\n  \"constraints\": {\n    \"deadline_ms\": 2,\n    \"max_billable_units\": 2\n  },\n  \"policy\": {\n    \"id\": \"<string>\"\n  }\n}")

	req, _ := http.NewRequest("POST", url, payload)

	req.Header.Add("Idempotency-Key", "<idempotency-key>")
	req.Header.Add("Authorization", "Bearer <token>")
	req.Header.Add("Content-Type", "application/json")

	res, _ := http.DefaultClient.Do(req)

	defer res.Body.Close()
	body, _ := io.ReadAll(res.Body)

	fmt.Println(string(body))

}

HttpResponse<String> response = Unirest.post("https://api.rafflesia.ai/v1/homology")
  .header("Idempotency-Key", "<idempotency-key>")
  .header("Authorization", "Bearer <token>")
  .header("Content-Type", "application/json")
  .body("{\n  \"query\": {\n    \"kind\": \"protein_sequence\",\n    \"sequence\": \"<string>\"\n  },\n  \"results\": {\n    \"max_results\": 5000,\n    \"significance_requirement\": \"not_requested\",\n    \"unit\": \"target\"\n  },\n  \"target\": {\n    \"database_release_id\": \"<string>\",\n    \"filter\": {\n      \"filters\": [\n        \"<unknown>\"\n      ],\n      \"op\": \"and\",\n      \"field\": \"<string>\",\n      \"filter\": \"<unknown>\",\n      \"value\": \"<string>\",\n      \"values\": [\n        \"<string>\"\n      ]\n    }\n  },\n  \"constraints\": {\n    \"deadline_ms\": 2,\n    \"max_billable_units\": 2\n  },\n  \"policy\": {\n    \"id\": \"<string>\"\n  }\n}")
  .asString();

require 'uri'
require 'net/http'

url = URI("https://api.rafflesia.ai/v1/homology")

http = Net::HTTP.new(url.host, url.port)
http.use_ssl = true

request = Net::HTTP::Post.new(url)
request["Idempotency-Key"] = '<idempotency-key>'
request["Authorization"] = 'Bearer <token>'
request["Content-Type"] = 'application/json'
request.body = "{\n  \"query\": {\n    \"kind\": \"protein_sequence\",\n    \"sequence\": \"<string>\"\n  },\n  \"results\": {\n    \"max_results\": 5000,\n    \"significance_requirement\": \"not_requested\",\n    \"unit\": \"target\"\n  },\n  \"target\": {\n    \"database_release_id\": \"<string>\",\n    \"filter\": {\n      \"filters\": [\n        \"<unknown>\"\n      ],\n      \"op\": \"and\",\n      \"field\": \"<string>\",\n      \"filter\": \"<unknown>\",\n      \"value\": \"<string>\",\n      \"values\": [\n        \"<string>\"\n      ]\n    }\n  },\n  \"constraints\": {\n    \"deadline_ms\": 2,\n    \"max_billable_units\": 2\n  },\n  \"policy\": {\n    \"id\": \"<string>\"\n  }\n}"

response = http.request(request)
puts response.read_body

{
  "ok": true,
  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
  "data": {
    "created_at": "<string>",
    "id": "<string>",
    "object": "<string>",
    "policy_id": "<string>",
    "query": {
      "kind": "<string>",
      "normalization_id": "<string>",
      "normalized_length": 123,
      "retention": "<string>",
      "sha256": "<string>"
    },
    "receipt": {
      "corpus_snapshot_id": "<string>",
      "database_release_id": "<string>",
      "engine": "<string>",
      "is_deterministic": true,
      "is_exhaustive": true,
      "is_policy_complete": true,
      "search_policy_id": "<string>",
      "semantic_profile_id": "<string>",
      "calibration_id": "<string>",
      "canonical_filter_sha256": "<string>",
      "filter_schema_id": "<string>",
      "job_id": "<string>",
      "query_compilation_id": "<string>",
      "submission_id": "<string>",
      "target_space_id": "<string>"
    },
    "results": {
      "max_results": 5000,
      "significance_requirement": "not_requested",
      "unit": "target"
    },
    "specification_sha256": "<string>",
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ],
    "failure": {
      "code": "<string>",
      "detail": "<string>",
      "is_retryable": true
    },
    "result_set": {
      "canonical_result_id": "<string>",
      "count": 123,
      "is_result_limit_reached": true,
      "object": "<string>",
      "sha256": "<string>",
      "url": "<string>"
    },
    "target_space": {
      "eligible_record_count": 123,
      "eligible_residue_count": 123,
      "id": "<string>",
      "is_filtered": true,
      "total_record_count": 123,
      "unknown_record_count": 123,
      "canonical_filter_sha256": "<string>",
      "filter_schema_id": "<string>"
    }
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
  "ok": true,
  "provenance": {
    "created_at": "<string>",
    "operation": "<string>",
    "request_id": "<string>",
    "server_version": "<string>",
    "cache_hit": true,
    "database_snapshots": [
      {
        "name": "<string>",
        "version": "<string>",
        "digest": "<string>",
        "kind": "<string>"
      }
    ],
    "generated_object_ids": [
      "<string>"
    ],
    "input_hash": "<string>",
    "parameters_hash": "<string>",
    "tool_versions": [
      {
        "name": "<string>",
        "version": "<string>",
        "path": "<string>"
      }
    ]
  },
  "warnings": [
    {
      "code": "<string>",
      "message": "<string>",
      "details": {}
    }
  ],
  "$schema": "<string>",
  "data": {
    "created_at": "<string>",
    "id": "<string>",
    "object": "<string>",
    "policy_id": "<string>",
    "query": {
      "kind": "<string>",
      "normalization_id": "<string>",
      "normalized_length": 123,
      "retention": "<string>",
      "sha256": "<string>"
    },
    "receipt": {
      "corpus_snapshot_id": "<string>",
      "database_release_id": "<string>",
      "engine": "<string>",
      "is_deterministic": true,
      "is_exhaustive": true,
      "is_policy_complete": true,
      "search_policy_id": "<string>",
      "semantic_profile_id": "<string>",
      "calibration_id": "<string>",
      "canonical_filter_sha256": "<string>",
      "filter_schema_id": "<string>",
      "job_id": "<string>",
      "query_compilation_id": "<string>",
      "submission_id": "<string>",
      "target_space_id": "<string>"
    },
    "results": {
      "max_results": 5000,
      "significance_requirement": "not_requested",
      "unit": "target"
    },
    "specification_sha256": "<string>",
    "warnings": [
      {
        "code": "<string>",
        "message": "<string>",
        "details": {}
      }
    ],
    "failure": {
      "code": "<string>",
      "detail": "<string>",
      "is_retryable": true
    },
    "result_set": {
      "canonical_result_id": "<string>",
      "count": 123,
      "is_result_limit_reached": true,
      "object": "<string>",
      "sha256": "<string>",
      "url": "<string>"
    },
    "target_space": {
      "eligible_record_count": 123,
      "eligible_residue_count": 123,
      "id": "<string>",
      "is_filtered": true,
      "total_record_count": 123,
      "unknown_record_count": 123,
      "canonical_filter_sha256": "<string>",
      "filter_schema_id": "<string>"
    }
  },
  "error": {
    "code": "<string>",
    "doc_url": "<string>",
    "message": "<string>",
    "details": {},
    "param": "<string>"
  },
  "evidence": {
    "warnings_count": 123,
    "duration_ms": 123,
    "input_refs": [
      "<string>"
    ],
    "object_refs": [
      "<string>"
    ],
    "output_refs": [
      "<string>"
    ],
    "row_count": 123
  }
}

{
  "$schema": "<string>",
  "detail": "<string>",
  "errors": [
    {
      "location": "<string>",
      "message": "<string>",
      "value": "<unknown>"
    }
  ],
  "instance": "<string>",
  "status": 123,
  "title": "<string>",
  "type": "about:blank"
}